vg::TargetValueSearch Class Reference

#include <cluster.hpp>

Public Member Functions
	TargetValueSearch ()=delete
	TargetValueSearch (const HandleGraph &handle_graph, DistanceHeuristic *upper_bound_heuristic, DistanceHeuristic *lower_bound_heuristic)
	~TargetValueSearch ()=default
bool	tv_path_exists (const pos_t &pos_1, const pos_t &pos_2, int64_t target_value, int64_t tolerance)
	Does a path exist from pos_1 to pos_2 with length within the tolerance from the target value?
int64_t	tv_path_length (const pos_t &pos_1, const pos_t &pos_2, int64_t target_value, int64_t tolerance)
vector< handle_t >	tv_path (const pos_t &pos_1, const pos_t &pos_2, int64_t target_value, int64_t tolerance)

Protected Member Functions

vector< handle_t >

tv_phase2 (const pos_t &pos_1, const pos_t &pos_2, int64_t target_value, int64_t tolerance, hash_map< pair< id_t, bool >, int64_t > &node_to_target_shorter, hash_map< pair< id_t, bool >, int64_t > &node_to_target_longer, pair< int64_t, pair< pair< id_t, bool >, int64_t > > &best_lng, pair< int64_t, pair< pair< id_t, bool >, int64_t > > &next_best, hash_map< pair< pair< id_t, bool >, int64_t >, pair< pair< id_t, bool >, int64_t > > &node_to_path)

Protected Attributes
const HandleGraph &	handle_graph
unique_ptr< DistanceHeuristic >	upper_bound_heuristic
unique_ptr< DistanceHeuristic >	lower_bound_heuristic

Constructor & Destructor Documentation

TargetValueSearch() [1/2]

vg::TargetValueSearch::TargetValueSearch ( )

delete

TargetValueSearch() [2/2]

vg::TargetValueSearch::TargetValueSearch	(	const HandleGraph &	handle_graph,
		DistanceHeuristic *	upper_bound_heuristic,
		DistanceHeuristic *	lower_bound_heuristic )

~TargetValueSearch()

vg::TargetValueSearch::~TargetValueSearch ( )

default

Member Function Documentation

tv_path()

vector< handle_t > vg::TargetValueSearch::tv_path	(	const pos_t &	pos_1,
		const pos_t &	pos_2,
		int64_t	target_value,
		int64_t	tolerance )

Returns a path from pos_1 to pos_2 with length closest to the target value. If there is no such path within the tolerance of the target value, returns an empty vector.

tv_path_exists()

bool vg::TargetValueSearch::tv_path_exists	(	const pos_t &	pos_1,
		const pos_t &	pos_2,
		int64_t	target_value,
		int64_t	tolerance )

Does a path exist from pos_1 to pos_2 with length within the tolerance from the target value?

tv_path_length()

int64_t vg::TargetValueSearch::tv_path_length	(	const pos_t &	pos_1,
		const pos_t &	pos_2,
		int64_t	target_value,
		int64_t	tolerance )

Returns the length of path from pos_1 to pos_2 with length closest to the target value. If there is no such path within the tolerance of the target value, returns numeric_limits<int64_t>::max().

tv_phase2()

vector< handle_t > vg::TargetValueSearch::tv_phase2 ( const pos_t & pos_1, const pos_t & pos_2, int64_t target_value, int64_t tolerance, hash_map< pair< id_t, bool >, int64_t > & node_to_target_shorter, hash_map< pair< id_t, bool >, int64_t > & node_to_target_longer, pair< int64_t, pair< pair< id_t, bool >, int64_t > > & best_lng, pair< int64_t, pair< pair< id_t, bool >, int64_t > > & next_best, hash_map< pair< pair< id_t, bool >, int64_t >, pair< pair< id_t, bool >, int64_t > > & node_to_path )

protected

Member Data Documentation

handle_graph

const HandleGraph& vg::TargetValueSearch::handle_graph

protected

lower_bound_heuristic

unique_ptr<DistanceHeuristic> vg::TargetValueSearch::lower_bound_heuristic

protected

upper_bound_heuristic

unique_ptr<DistanceHeuristic> vg::TargetValueSearch::upper_bound_heuristic

protected

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The documentation for this class was generated from the following files:

• src/cluster.hpp
• src/cluster.cpp