Uses of Class
org.biojava.bio.symbol.AbstractSymbolList
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Packages that use AbstractSymbolList Package Description org.biojava.bio.alignment Classes to generate and describe sequence alignments.org.biojava.bio.seq.impl Standard in-memory implementations ofSequence
andFeature
.org.biojava.bio.symbol Representation of the Symbols that make up a sequence, and locations within them. -
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Uses of AbstractSymbolList in org.biojava.bio.alignment
Subclasses of AbstractSymbolList in org.biojava.bio.alignment Modifier and Type Class Description class
AbstractULAlignment
class
AbstractULAlignment.SubULAlignment
class
FlexibleAlignment
FlexibleAlignment is a class which implements UnequalLengthAlignment, ARAlignment and EditableAlignment It places no restriction on where any sequence can be in the alignment so there could be gaps in the alignment. -
Uses of AbstractSymbolList in org.biojava.bio.seq.impl
Subclasses of AbstractSymbolList in org.biojava.bio.seq.impl Modifier and Type Class Description class
AssembledSymbolList
Support class for applications which need to patch together sections of sequence into a single SymbolList.class
NewAssembledSymbolList
Support class for applications which need to patch together sections of sequence into a single SymbolList.class
SimpleGappedSequence
Simple implementation of GappedSequence. -
Uses of AbstractSymbolList in org.biojava.bio.symbol
Subclasses of AbstractSymbolList in org.biojava.bio.symbol Modifier and Type Class Description class
ChunkedSymbolList
SymbolList implementation using constant-size chunks.class
DummySymbolList
Symbol list which just consists of non-informative symbols.class
PackedSymbolList
A SymbolList that stores symbols as bit-patterns in an array of longs.class
SimpleAlignment
A simple implementation of an Alignment.class
SimpleGappedSymbolList
This implementation of GappedSymbolList wraps a SymbolList, allowing you to insert gaps.class
SimpleSymbolList
Basic implementation of SymbolList.
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