Uses of Class
org.biojava.bio.structure.align.helper.JointFragments
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Packages that use JointFragments Package Description org.biojava.bio.structure.align.pairwise Classes for the pairwise alignment of structures. -
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Uses of JointFragments in org.biojava.bio.structure.align.pairwise
Methods in org.biojava.bio.structure.align.pairwise that return JointFragments Modifier and Type Method Description JointFragments[]
FragmentJoiner. approach_ap3(Atom[] ca1, Atom[] ca2, FragmentPair[] fraglst, StrucAligParameters params)
JointFragments[]
FragmentJoiner. frag_pairwise_compat(FragmentPair[] fraglst, int angleDiff, float fragCompatDist, int maxRefine)
Calculate the pairwise compatibility of fpairs.Methods in org.biojava.bio.structure.align.pairwise with parameters of type JointFragments Modifier and Type Method Description void
AlternativeAlignment. apairs_from_idxlst(JointFragments jf)
Set apairs according to a list of (i,j) tuples.static double
FragmentJoiner. getRMS(Atom[] ca1, Atom[] ca2, JointFragments frag)
get the RMS of the JointFragments pair frag
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