Package org.biojava.bio.program.fastq
Class Fastq
- java.lang.Object
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- org.biojava.bio.program.fastq.Fastq
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public final class Fastq extends java.lang.Object
FASTQ formatted sequence.
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description java.lang.String
getDescription()
Return the description of this FASTQ formatted sequence.java.lang.String
getQuality()
Return the quality scores for this FASTQ formatted sequence.java.lang.String
getSequence()
Return the sequence for this FASTQ formatted sequence.FastqVariant
getVariant()
Return the FASTQ sequence format variant for this FASTQ formatted sequence.
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Method Detail
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getDescription
public java.lang.String getDescription()
Return the description of this FASTQ formatted sequence. The description will not be null.- Returns:
- the description of this FASTQ formatted sequence
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getSequence
public java.lang.String getSequence()
Return the sequence for this FASTQ formatted sequence. The sequence will not be null.- Returns:
- the sequence for this FASTQ formatted sequence
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getQuality
public java.lang.String getQuality()
Return the quality scores for this FASTQ formatted sequence. The quality scores will not be null.- Returns:
- the quality scores for this FASTQ formatted sequence
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getVariant
public FastqVariant getVariant()
Return the FASTQ sequence format variant for this FASTQ formatted sequence. The FASTQ sequence format variant will not be null.- Returns:
- the FASTQ sequence format variant for this FASTQ formatted sequence
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